Transcript: SAMMSON:5

Basic information

LNCipedia transcript ID: SAMMSON:5 ?
HGNC Gene Symbol: SAMMSON    ?
HGNC Full Gene Name: survival associated mitochondrial melanoma specific oncogenic non-coding RNA
Location (hg19): chr3:70061568-70064165
Strand: +
Class: intergenic
Transcript size: 1649 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT090374; FPKM1_group_21395_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -100.5362 non-coding ?
CPAT coding probability 5.63% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
SAMMSON:5 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy:
Randfold P-value:

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
3.1 lnc-MITF-1:5
4.0 SAMMSON:5