Transcript: SAMMSON:6

Basic information

LNCipedia transcript ID: SAMMSON:6 
LNCipedia gene ID: SAMMSON
Location (hg38): chr3:69999733-70003043
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3311 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000240405.1|ENCT00000290146.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 68.9225 coding 
CPAT coding probability 43.47% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SAMMSON:6 no no no no

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SAMMSON:6
5.0 SAMMSON:6
5.1 SAMMSON:6
5.2 SAMMSON:6