Transcript: SAMMSON:7

Basic information

LNCipedia transcript ID: SAMMSON:7 
LNCipedia gene ID: SAMMSON
Location (hg38): chr3:69999733-70462735
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 908 bp
Exons: 9
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000240405.1|MICT00000244986.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -11.3905 non-coding 
CPAT coding probability 14.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAMMSON:7 no no no no

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SAMMSON:7
5.0 SAMMSON:7
5.1 SAMMSON:7
5.2 SAMMSON:7