Transcript: SAMMSON:9

Basic information

LNCipedia transcript ID: SAMMSON:9 
LNCipedia gene ID: SAMMSON
Location (hg38): chr3:69999733-70016525
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3383 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000240405.1|ENCT00000290147.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.8047 non-coding 
CPAT coding probability 1.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAMMSON:9 no no no no

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SAMMSON:9
5.0 SAMMSON:9
5.1 SAMMSON:9
5.2 SAMMSON:9