Transcript: SNHG12:5

Basic information

LNCipedia transcript ID: SNHG12:5 ?
HGNC Gene Symbol: SNHG12    ?
HGNC Full Gene Name: small nucleolar RNA host gene 12
Location (hg19): chr1:28906871-28908369
Strand: -
Class: intergenic
Transcript size: 675 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000461832; ENST00000461832.1; SNHG12-008; OTTHUMT00000010363.1
Alternative gene names: ENSG00000197989; SNHG12; ENSG00000197989.8; OTTHUMG00000003654.2; ENSG00000197989.9; ENSG00000197989.13; PNAS-123; LINC00100; ASLNC04080


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 1 coding ?
Highest peak:93
PhyloCSF score -105.7518 non-coding ?
CPAT coding probability 8.63% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: no

Locus conservation

Locus conservation?
SNHG12:5 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -282.46
Randfold P-value: 0.032

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-3182 67.77
hsa-miR-452-3p 63.61
hsa-miR-1237 60.75

Available literature

  1. Ruan (2016), Long non-coding RNA small nucleolar RNA host gene 12 (SNHG12) promotes cell proliferation and migration by upregulating angiomotin gene expression in human osteosarcoma cells., Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World journal of gastroenterology


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-TAF12-1:4
4.0 SNHG12:5
3.1 lnc-TAF12-1:4