Transcript: SNHG16:6

Basic information

LNCipedia transcript ID: SNHG16:6 
HGNC Gene Symbol: SNHG16    
HGNC Full Gene Name: small nucleolar RNA host gene 16
Ensembl Gene ID: ENSG00000163597
Ensembl Transcript ID: ENST00000586846
Location (hg38): chr17:76557767-76558460
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT056042; ENST00000586846.1
Alternative gene names: ENSG00000163597.10; SNHG16; ENSG00000163597.14; ncRAN; Nbla12061; Nbla10727


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 3 non-coding 
PhyloCSF score -73.492 non-coding 
CPAT coding probability 4.01% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.176470588
seqAAMATPVGVEHGEQSQAFSDDGWLGGLKVLDEKMLSKR
orfFrame10.7078037

In stringent set: no

Locus conservation

Locus conservation?
SNHG16:6 no no no no

Available literature

  1. Qi (2015), Down-regulation of ncRAN, a long non-coding RNA, contributes to colorectal cancer cell migration and invasion and predicts poor overall survival for colorectal cancer patients., Mol. Carcinog.
  2. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget
  3. Zhu (2011), ncRAN, a newly identified long noncoding RNA, enhances human bladder tumor growth, invasion, and survival., Urology
  4. Yu (2009), High expression of ncRAN, a novel non-coding RNA mapped to chromosome 17q25.1, is associated with poor prognosis in neuroblastoma., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC090699.1.1-1:6
4.0 SNHG16:6
4.1 SNHG16:6
5.0 SNHG16:6
5.1 SNHG16:6
5.2 SNHG16:6