Transcript: SNHG1:14

Basic information

LNCipedia transcript ID: SNHG1:14 ?
HGNC Gene Symbol: SNHG1    ?
HGNC Full Gene Name: small nucleolar RNA host gene 1
Location (hg38): chr11:62852290-62855488
Strand: -
Class: intergenic
Transcript size: 748 bp
Exons: 9
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000541615; ENST00000541615.1; SNHG1-020; OTTHUMT00000396025.1; NONHSAT021836; ENST00000541615.5
Alternative gene names: ENSG00000255717; SNHG1; ENSG00000255717.1; OTTHUMG00000167743.1; ENSG00000255717.2; ENSG00000255717.6; UHG; NCRNA00057; LINC00057; lncRNA16

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 3 coding ?
Highest peak:16
PhyloCSF score -26.3815 non-coding ?
CPAT coding probability 2.86% non-coding ?
Bazzini small ORFs 1 coding ?
In stringent set: no

Locus conservation

Locus conservation?
SNHG1:14 yes no

Available literature

  1. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Experimental dermatology
  2. Li (2015), Discovery of Protein-lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets., Frontiers in bioengineering and biotechnology
  3. You (2015), Noncoding RNA small nucleolar RNA host gene 1 promote cell proliferation in nonsmall cell lung cancer., Indian journal of cancer
  4. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PloS one
  5. Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PloS one
  6. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World journal of gastroenterology
  7. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome research
  8. Mizutani (2012), Identification and characterization of novel genotoxic stress-inducible nuclear long noncoding RNAs in mammalian cells., PloS one
  9. Mercer (2010), Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation., BMC neuroscience
  10. Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic acids research
  11. Tanaka-Fujita (2007), Human and mouse protein-noncoding snoRNA host genes with dissimilar nucleotide sequences show chromosomal synteny., RNA (New York, N.Y.)
  12. Pelczar (1998), The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family., Molecular and cellular biology
  13. Tycowski (1996), A mammalian gene with introns instead of exons generating stable RNA products., Nature

Other resources

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
4.1 SNHG1:14
4.0 SNHG1:14
1.3 lnc-WDR74-1:8
3.1 lnc-WDR74-1:10