Transcript: SNHG1:53

Basic information

LNCipedia transcript ID: SNHG1:53 
LNCipedia gene ID: SNHG1
Location (hg38): chr11:62852749-62855473
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 623 bp
Exons: 9
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000255717.2|ENST00000545688.1
Alternative gene names: UHG; NCRNA00057; LINC00057; lncRNA16


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -222.9555 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG1:53 no no no no

Available literature

  1. Zhu (2017), LncRNA16 is a potential biomarker for diagnosis of early-stage lung cancer that promotes cell proliferation by regulating the cell cycle., Oncotarget
  2. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
  3. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  4. Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE
  5. Li (2014), Discovery of Protein-lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets., Front Bioeng Biotechnol
  6. You (2014), Noncoding RNA small nucleolar RNA host gene 1 promote cell proliferation in nonsmall cell lung cancer., Indian J Cancer
  7. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.
  8. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  9. Mizutani (2012), Identification and characterization of novel genotoxic stress-inducible nuclear long noncoding RNAs in mammalian cells., PLoS ONE
  10. Mercer (2010), Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation., BMC Neurosci
  11. Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.
  12. Tanaka-Fujita (2007), Human and mouse protein-noncoding snoRNA host genes with dissimilar nucleotide sequences show chromosomal synteny., RNA
  13. Pelczar (1998), The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family., Mol. Cell. Biol.
  14. Tycowski (1996), A mammalian gene with introns instead of exons generating stable RNA products., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SNHG1:53
5.0 SNHG1:53
5.1 SNHG1:53
5.2 SNHG1:53