Transcript: THRB-AS1:1

Basic information

LNCipedia transcript ID: THRB-AS1:1 
LNCipedia gene ID: THRB-AS1
RefSeq ID: NR_046244
Location (hg38): chr3:24494087-24500011
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 885 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000432368; ENST00000432368.1; AC012087.2-001; OTTHUMT00000341251.1; NR_046244; NR_046244.1
Alternative gene names: ENSG00000228791; AC012087.2; ENSG00000228791.1; OTTHUMG00000155683.1; ; THRB-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -154.7829 non-coding 
CPAT coding probability 8.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
THRB-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NR1D2-1:1
3.1 lnc-NR1D2-1:1
4.0 THRB-AS1:1
4.1 THRB-AS1:1
5.0 THRB-AS1:1
5.1 THRB-AS1:1
5.2 THRB-AS1:1