Transcript: THUMPD3-AS1:16

Basic information

LNCipedia transcript ID: THUMPD3-AS1:16 
LNCipedia gene ID: THUMPD3-AS1
Location (hg38): chr3:9393950-9397068
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3119 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000383834.2; RP11-58B17.1-201; NONHSAT087790
Alternative gene names: ENSG00000206573.4; RP11-58B17.1; OTTHUMG00000164357.4; SETD5-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.2014 non-coding 
CPAT coding probability 57.96% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
THUMPD3-AS1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRGAP3-1:11
4.0 THUMPD3-AS1:16
4.1 THUMPD3-AS1:16
5.0 THUMPD3-AS1:16
5.1 THUMPD3-AS1:16
5.2 THUMPD3-AS1:16