Transcript: THUMPD3-AS1:25

Basic information

LNCipedia transcript ID: THUMPD3-AS1:25 
HGNC Gene Symbol: THUMPD3-AS1    
HGNC Full Gene Name: THUMPD3 antisense RNA 1
Ensembl Gene ID: ENSG00000206573
Ensembl Transcript ID: ENST00000521267
Location (hg38): chr3:9389360-9396605
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 851 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521267.1; RP11-58B17.1-002; OTTHUMT00000378426.2; NONHSAT087773; ENST00000521267.5
Alternative gene names: ENSG00000206573.4; RP11-58B17.1; OTTHUMG00000164357.4; SETD5-AS1; ENSG00000206573.8; THUMPD3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.0929 non-coding 
CPAT coding probability 4.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
THUMPD3-AS1:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRGAP3-1:18
4.0 THUMPD3-AS1:25
4.1 THUMPD3-AS1:25
5.0 THUMPD3-AS1:25
5.1 THUMPD3-AS1:25
5.2 THUMPD3-AS1:25