Transcript: THUMPD3-AS1:31

Basic information

LNCipedia transcript ID: THUMPD3-AS1:31 
HGNC Gene Symbol: THUMPD3-AS1    
HGNC Full Gene Name: THUMPD3 antisense RNA 1
Ensembl Gene ID: ENSG00000206573
Ensembl Transcript ID: ENST00000523354
Location (hg38): chr3:9385836-9390619
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 459 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523354.1; RP11-58B17.1-010; OTTHUMT00000378538.1; NONHSAT087769
Alternative gene names: ENSG00000206573.4; RP11-58B17.1; OTTHUMG00000164357.4; SETD5-AS1; ENSG00000206573.8; THUMPD3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.0596 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
THUMPD3-AS1:31 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRGAP3-1:21
4.0 THUMPD3-AS1:31
4.1 THUMPD3-AS1:31
5.0 THUMPD3-AS1:31
5.1 THUMPD3-AS1:31
5.2 THUMPD3-AS1:31