Transcript: THUMPD3-AS1:38

Basic information

LNCipedia transcript ID: THUMPD3-AS1:38 
LNCipedia gene ID: THUMPD3-AS1
Ensembl Gene ID: ENSG00000254485
Ensembl Transcript ID: ENST00000466431
Location (hg38): chr3:9349685-9362941
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 484 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000466431.2; RP11-380O24.1-005; OTTHUMT00000378421.3; NONHSAT087760; ENST00000466431.6
Alternative gene names: ENSG00000254485.1; RP11-380O24.1; OTTHUMG00000165687.1; ENSG00000254485.5; ; AC026191.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.776 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
THUMPD3-AS1:38 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRGAP3-1:26
4.0 THUMPD3-AS1:38
4.1 THUMPD3-AS1:38
5.0 THUMPD3-AS1:38
5.1 THUMPD3-AS1:38
5.2 THUMPD3-AS1:38