Transcript: ZFAS1:5

Basic information

LNCipedia transcript ID: ZFAS1:5 
LNCipedia gene ID: ZFAS1
Location (hg38): chr20:49278178-49289258
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 687 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT080208; NR_003605
Alternative gene names: HSUP1; HSUP2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -50.4695 non-coding 
CPAT coding probability 2.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ZFAS1:5 yes no no no

Available literature

  1. Thorenoor (2016), Long non-coding RNA ZFAS1 interacts with CDK1 and is involved in p53-dependent cell cycle control and apoptosis in colorectal cancer., Oncotarget
  2. Zhang (2016), Long non-coding RNA chromogenic in situ hybridisation signal pattern correlation with breast tumour pathology., J. Clin. Pathol.
  3. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  4. Na (2015), Long non-coding RNA UCA1 contributes to the progression of prostate cancer and regulates proliferation through KLF4-KRT6/13 signaling pathway., Int J Clin Exp Med
  5. Pei (2015), Notch-1 promotes breast cancer cells proliferation by regulating LncRNA GAS5., Int J Clin Exp Med
  6. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget
  7. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.
  8. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  9. Askarian-Amiri (2011), SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer., RNA
  10. Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.
  11. Sharova (2009), Database for mRNA half-life of 19 977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DDX27-1:8
4.0 ZFAS1:5
4.1 ZFAS1:5
5.0 ZFAS1:5
5.1 ZFAS1:5
5.2 ZFAS1:5