Transcript: lnc-ADA-3:12

Basic information

LNCipedia transcript ID: lnc-ADA-3:12 
LNCipedia gene ID: lnc-ADA-3
Ensembl Gene ID: ENSG00000132832
Ensembl Transcript ID: ENST00000415889
Location (hg38): chr20:44656451-44696096
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1416 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT079897; ENST00000415889.2
Alternative gene names: ENSG00000132832.5; RP11-445H22.3; ENSG00000132832.9; LINC01260; ENSG00000132832.10; AL139352.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.4342 non-coding 
CPAT coding probability 2.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADA-3:12 no no no no

Available literature

  1. Cai (2015), Long noncoding RNA CCAT2 promotes breast tumor growth by regulating the Wnt signaling pathway., Onco Targets Ther
  2. Wang (2015), Serum LncRNAs Profiles Serve as Novel Potential Biomarkers for the Diagnosis of HBV-Positive Hepatocellular Carcinoma., PLoS ONE
  3. Xu (2015), Clinical significance of high expression of circulating serum lncRNA RP11-445H22.4 in breast cancer patients: a Chinese population-based study., Tumour Biol.
  4. Xing (2014), Identification of long noncoding RNA associated with osteoarthritis in humans., Orthop Surg


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADA-1:15
4.0 lnc-ADA-3:12
4.1 lnc-ADA-3:12
5.0 lnc-ADA-3:12
5.1 lnc-MATN4-24:26
5.2 lnc-ADA-3:12