Transcript: lnc-DIRC3-1:2

Basic information

LNCipedia transcript ID: lnc-DIRC3-1:2 
LNCipedia gene ID: lnc-DIRC3-1
RefSeq ID: NR_026597
Location (hg38): chr2:217284023-217756593
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3906 bp
Exons: 13
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT076860; NR_026597; NR_026597.1
Alternative gene names: DIRC3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.3005 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-DIRC3-1:2 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep
  2. Dryden (2014), Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DIRC3-1:2
4.0 lnc-DIRC3-1:2
4.1 lnc-DIRC3-1:2
5.0 lnc-DIRC3-1:2
5.1 lnc-MREG-26:1
5.2 lnc-DIRC3-1:2