Transcript: lnc-IRX3-80:54
Basic information
LNCipedia transcript ID: lnc-IRX3-80:54
LNCipedia gene ID: lnc-IRX3-80
Ensembl Gene ID:
ENSG00000245694
Ensembl Transcript ID:
ENST00000613942
Location (hg38): chr16:54851640-54925144
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2601 bp
Exons: 6
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613942.2
Alternative gene names: ENSG00000245694.9; CRNDE
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
Available literature
- Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
- Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
- Chen (2015), Differential lncRNA expression profiles in recurrent gliomas compared with primary gliomas identified by microarray analysis., Int J Clin Exp Med
- Maguire (2015), SF3B1 mutations constitute a novel therapeutic target in breast cancer., J. Pathol.
- Pastori (2015), The Bromodomain protein BRD4 controls HOTAIR, a long noncoding RNA essential for glioblastoma proliferation., Proc. Natl. Acad. Sci. U.S.A.
- Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
- Szafron (2015), The Novel Gene CRNDE Encodes a Nuclear Peptide (CRNDEP) Which Is Overexpressed in Highly Proliferating Tissues., PLoS ONE
- Wang (2015), CRNDE, a long-noncoding RNA, promotes glioma cell growth and invasion through mTOR signaling., Cancer Lett.
- Zheng (2015), CRNDE affects the malignant biological characteristics of human glioma stem cells by negatively regulating miR-186., Oncotarget
- Barnhill (2014), High expression of CAI2, a 9p21-embedded long noncoding RNA, contributes to advanced-stage neuroblastoma., Cancer Res.
- Chi (2014), Role of BC040587 as a predictor of poor outcome in breast cancer., Cancer Cell Int.
- Guo (2014), BRAF-activated long non-coding RNA contributes to colorectal cancer migration by inducing epithelial-mesenchymal transition., Oncol Lett
- Roberts (2014), The role of long non-coding RNAs in neurodevelopment, brain function and neurological disease., Philos. Trans. R. Soc. Lond., B, Biol. Sci.
- Furney (2013), SF3B1 mutations are associated with alternative splicing in uveal melanoma., Cancer Discov
- Graham (2011), Colorectal Neoplasia Differentially Expressed (CRNDE), a Novel Gene with Elevated Expression in Colorectal Adenomas and Adenocarcinomas., Genes Cancer
- Lin (2011), RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders., PLoS ONE
LNCipedia transcript ID history
LNCipedia version | LNCipedia transcript ID |
---|---|
4.1 | CRNDE:60 |
5.0 | CRNDE:60 |
5.1 | lnc-CFAP20-80:54 |
5.2 | lnc-IRX3-80:54 |