Gene: lnc-IRX3-80

Basic information

LNCipedia gene ID: lnc-IRX3-80 
Location (hg38): chr16:54845189-54930942
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA_gene
Transcripts: 66

Transcripts

Transcript IDLocation (hg38)Length
lnc-IRX3-80:1 chr16:54912772-54930942 8903 bp
lnc-IRX3-80:10 chr16:54918865-54929189 1144 bp
lnc-IRX3-80:11 chr16:54905876-54929172 18567 bp
lnc-IRX3-80:12 chr16:54913428-54929172 10739 bp
lnc-IRX3-80:13 chr16:54924859-54929172 758 bp
lnc-IRX3-80:14 chr16:54925153-54929172 464 bp
lnc-IRX3-80:15 chr16:54918866-54929167 1034 bp
lnc-IRX3-80:16 chr16:54919057-54929153 829 bp
lnc-IRX3-80:17 chr16:54918931-54929151 1092 bp
lnc-IRX3-80:18 chr16:54924859-54929149 735 bp
lnc-IRX3-80:19 chr16:54924937-54929133 641 bp
lnc-IRX3-80:2 chr16:54905876-54930578 19697 bp
lnc-IRX3-80:20 chr16:54919931-54929133 1023 bp
lnc-IRX3-80:21 chr16:54923281-54928886 600 bp
lnc-IRX3-80:22 chr16:54915380-54928886 13507 bp
lnc-IRX3-80:23 chr16:54916187-54928886 8332 bp
lnc-IRX3-80:24 chr16:54916187-54928886 6606 bp
lnc-IRX3-80:25 chr16:54918870-54928886 749 bp
lnc-IRX3-80:26 chr16:54919066-54928886 757 bp
lnc-IRX3-80:27 chr16:54919173-54928886 533 bp
lnc-IRX3-80:28 chr16:54923281-54928886 600 bp
lnc-IRX3-80:29 chr16:54912772-54928838 2705 bp
lnc-IRX3-80:3 chr16:54905876-54930578 18885 bp
lnc-IRX3-80:30 chr16:54892936-54928835 5766 bp
lnc-IRX3-80:31 chr16:54919173-54928812 459 bp
lnc-IRX3-80:32 chr16:54919260-54928809 4544 bp
lnc-IRX3-80:33 chr16:54918886-54928796 643 bp
lnc-IRX3-80:34 chr16:54918870-54928796 659 bp
lnc-IRX3-80:35 chr16:54918933-54928779 496 bp
lnc-IRX3-80:36 chr16:54918866-54928778 921 bp
lnc-IRX3-80:37 chr16:54918865-54928778 922 bp
lnc-IRX3-80:38 chr16:54918865-54928778 850 bp
lnc-IRX3-80:39 chr16:54919066-54928716 587 bp
lnc-IRX3-80:4 chr16:54905876-54930578 15622 bp
lnc-IRX3-80:40 chr16:54905876-54928564 17959 bp
lnc-IRX3-80:41 chr16:54918863-54928564 627 bp
lnc-IRX3-80:42 chr16:54918864-54928564 709 bp
lnc-IRX3-80:43 chr16:54912772-54928559 6796 bp
lnc-IRX3-80:44 chr16:54918932-54928551 628 bp
lnc-IRX3-80:45 chr16:54918886-54928551 591 bp
lnc-IRX3-80:46 chr16:54918863-54928551 614 bp
lnc-IRX3-80:47 chr16:54918864-54928551 696 bp
lnc-IRX3-80:48 chr16:54917939-54928500 1498 bp
lnc-IRX3-80:49 chr16:54912772-54928329 11296 bp
lnc-IRX3-80:5 chr16:54905876-54930578 18868 bp
lnc-IRX3-80:50 chr16:54851513-54928329 8721 bp
lnc-IRX3-80:51 chr16:54912772-54927660 8960 bp
lnc-IRX3-80:52 chr16:54919260-54925747 6488 bp
lnc-IRX3-80:53 chr16:54918960-54925199 415 bp
lnc-IRX3-80:54 chr16:54851640-54925144 2601 bp
lnc-IRX3-80:55 chr16:54851513-54924928 7213 bp
lnc-IRX3-80:56 chr16:54919054-54923779 464 bp
lnc-IRX3-80:57 chr16:54918870-54920616 659 bp
lnc-IRX3-80:58 chr16:54851513-54913442 2483 bp
lnc-IRX3-80:59 chr16:54889539-54893483 2340 bp
lnc-IRX3-80:6 chr16:54929419-54930578 1160 bp
lnc-IRX3-80:60 chr16:54847247-54874168 865 bp
lnc-IRX3-80:61 chr16:54851640-54852733 1094 bp
lnc-IRX3-80:62 chr16:54847203-54848488 719 bp
lnc-IRX3-80:63 chr16:54847033-54848297 363 bp
lnc-IRX3-80:64 chr16:54845189-54848278 546 bp
lnc-IRX3-80:65 chr16:54847247-54848233 420 bp
lnc-IRX3-80:66 chr16:54847249-54848233 418 bp
lnc-IRX3-80:7 chr16:54918932-54929641 1442 bp
lnc-IRX3-80:8 chr16:54925153-54929189 481 bp
lnc-IRX3-80:9 chr16:54918865-54929189 1057 bp


Locus conservation

Locus conservation?
lnc-IRX3-80 yes no no no

Available literature

  1. Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
  2. Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
  3. Chen (2015), Differential lncRNA expression profiles in recurrent gliomas compared with primary gliomas identified by microarray analysis., Int J Clin Exp Med
  4. Maguire (2015), SF3B1 mutations constitute a novel therapeutic target in breast cancer., J. Pathol.
  5. Pastori (2015), The Bromodomain protein BRD4 controls HOTAIR, a long noncoding RNA essential for glioblastoma proliferation., Proc. Natl. Acad. Sci. U.S.A.
  6. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  7. Szafron (2015), The Novel Gene CRNDE Encodes a Nuclear Peptide (CRNDEP) Which Is Overexpressed in Highly Proliferating Tissues., PLoS ONE
  8. Wang (2015), CRNDE, a long-noncoding RNA, promotes glioma cell growth and invasion through mTOR signaling., Cancer Lett.
  9. Zheng (2015), CRNDE affects the malignant biological characteristics of human glioma stem cells by negatively regulating miR-186., Oncotarget
  10. Barnhill (2014), High expression of CAI2, a 9p21-embedded long noncoding RNA, contributes to advanced-stage neuroblastoma., Cancer Res.
  11. Chi (2014), Role of BC040587 as a predictor of poor outcome in breast cancer., Cancer Cell Int.
  12. Guo (2014), BRAF-activated long non-coding RNA contributes to colorectal cancer migration by inducing epithelial-mesenchymal transition., Oncol Lett
  13. Roberts (2014), The role of long non-coding RNAs in neurodevelopment, brain function and neurological disease., Philos. Trans. R. Soc. Lond., B, Biol. Sci.
  14. Furney (2013), SF3B1 mutations are associated with alternative splicing in uveal melanoma., Cancer Discov
  15. Graham (2011), Colorectal Neoplasia Differentially Expressed (CRNDE), a Novel Gene with Elevated Expression in Colorectal Adenomas and Adenocarcinomas., Genes Cancer
  16. Lin (2011), RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders., PLoS ONE