Transcript: lnc-SLC39A11-10:31

Basic information

LNCipedia transcript ID: lnc-SLC39A11-10:31 
HGNC Gene Symbol: lnc-SLC39A11-10    
HGNC Full Gene Name: SOX9 antisense RNA 1
Ensembl Gene ID: ENSG00000234899
Ensembl Transcript ID: ENST00000602213
Location (hg38): chr17:72040714-72111703
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 821 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT055647; ENST00000602213.1; ENST00000602213.5
Alternative gene names: ENSG00000234899.5; SOX9-AS1; ENSG00000234899.9; FLJ37644


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.3408 non-coding 
CPAT coding probability 4.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-10:31 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC39A11-2:20
4.0 SOX9-AS1:21
4.1 SOX9-AS1:21
5.0 SOX9-AS1:21
5.1 lnc-GRB2-56:31
5.2 lnc-SLC39A11-10:31