Gene: lnc-SLC39A11-10
Basic information
HGNC Gene Symbol:
SOX9-AS1
?
HGNC Full Gene Name:
SOX9 antisense RNA 1
Location (hg38): chr17:72021851-72237203
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA_gene
Transcripts: 54
Transcripts
| Transcript ID | Location (hg38) | Length |
|---|---|---|
| lnc-SLC39A11-10:1 | chr17:72219946-72237203 | 1563 bp |
| lnc-SLC39A11-10:10 | chr17:72079938-72120793 | 1739 bp |
| lnc-SLC39A11-10:11 | chr17:72070864-72120792 | 3386 bp |
| lnc-SLC39A11-10:12 | chr17:72070864-72120792 | 840 bp |
| lnc-SLC39A11-10:13 | chr17:72079938-72120792 | 1738 bp |
| lnc-SLC39A11-10:14 | chr17:72080963-72120792 | 769 bp |
| lnc-SLC39A11-10:15 | chr17:72071055-72120788 | 447 bp |
| lnc-SLC39A11-10:16 | chr17:72076114-72120777 | 961 bp |
| lnc-SLC39A11-10:17 | chr17:72070864-72119547 | 2987 bp |
| lnc-SLC39A11-10:18 | chr17:72070864-72119547 | 3057 bp |
| lnc-SLC39A11-10:19 | chr17:72071042-72119547 | 394 bp |
| lnc-SLC39A11-10:2 | chr17:72221130-72221836 | 465 bp |
| lnc-SLC39A11-10:20 | chr17:72071043-72119547 | 567 bp |
| lnc-SLC39A11-10:21 | chr17:72080963-72119547 | 873 bp |
| lnc-SLC39A11-10:22 | chr17:72090755-72119547 | 484 bp |
| lnc-SLC39A11-10:23 | chr17:72090755-72119523 | 460 bp |
| lnc-SLC39A11-10:24 | chr17:72071042-72119493 | 340 bp |
| lnc-SLC39A11-10:25 | chr17:72081188-72119458 | 503 bp |
| lnc-SLC39A11-10:26 | chr17:72071049-72119450 | 467 bp |
| lnc-SLC39A11-10:27 | chr17:72071043-72119448 | 468 bp |
| lnc-SLC39A11-10:28 | chr17:72071049-72118298 | 510 bp |
| lnc-SLC39A11-10:29 | chr17:72071043-72116016 | 3032 bp |
| lnc-SLC39A11-10:3 | chr17:72141386-72220718 | 577 bp |
| lnc-SLC39A11-10:30 | chr17:72071042-72116016 | 3033 bp |
| lnc-SLC39A11-10:31 | chr17:72040714-72111703 | 821 bp |
| lnc-SLC39A11-10:32 | chr17:72110178-72110724 | 394 bp |
| lnc-SLC39A11-10:33 | chr17:72090821-72110548 | 443 bp |
| lnc-SLC39A11-10:34 | chr17:72090819-72110548 | 445 bp |
| lnc-SLC39A11-10:35 | chr17:72104853-72110479 | 483 bp |
| lnc-SLC39A11-10:36 | chr17:72081912-72089120 | 435 bp |
| lnc-SLC39A11-10:37 | chr17:72081921-72089120 | 426 bp |
| lnc-SLC39A11-10:38 | chr17:72076486-72085501 | 1001 bp |
| lnc-SLC39A11-10:39 | chr17:72076106-72085089 | 972 bp |
| lnc-SLC39A11-10:4 | chr17:72131775-72176984 | 298 bp |
| lnc-SLC39A11-10:40 | chr17:72071049-72084081 | 480 bp |
| lnc-SLC39A11-10:41 | chr17:72040647-72057734 | 576 bp |
| lnc-SLC39A11-10:42 | chr17:72034107-72057734 | 582 bp |
| lnc-SLC39A11-10:43 | chr17:72037314-72057734 | 650 bp |
| lnc-SLC39A11-10:44 | chr17:72040647-72057734 | 576 bp |
| lnc-SLC39A11-10:45 | chr17:72034107-72057730 | 578 bp |
| lnc-SLC39A11-10:46 | chr17:72037314-72057719 | 635 bp |
| lnc-SLC39A11-10:47 | chr17:72040809-72046347 | 961 bp |
| lnc-SLC39A11-10:48 | chr17:72031426-72040212 | 5836 bp |
| lnc-SLC39A11-10:49 | chr17:72021853-72037376 | 886 bp |
| lnc-SLC39A11-10:5 | chr17:72172712-72176972 | 247 bp |
| lnc-SLC39A11-10:50 | chr17:72025898-72035869 | 2051 bp |
| lnc-SLC39A11-10:51 | chr17:72021851-72034092 | 323 bp |
| lnc-SLC39A11-10:52 | chr17:72021851-72025997 | 381 bp |
| lnc-SLC39A11-10:53 | chr17:72021851-72025979 | 363 bp |
| lnc-SLC39A11-10:54 | chr17:72021851-72025962 | 346 bp |
| lnc-SLC39A11-10:6 | chr17:72167387-72176969 | 218 bp |
| lnc-SLC39A11-10:7 | chr17:72040732-72173583 | 733 bp |
| lnc-SLC39A11-10:8 | chr17:72090459-72141780 | 742 bp |
| lnc-SLC39A11-10:9 | chr17:72071055-72120805 | 520 bp |
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| lnc-SLC39A11-10 | no | no | no | no |
Available literature
- Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
- Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget