Transcript: lnc-SLC39A11-10:36

Basic information

LNCipedia transcript ID: lnc-SLC39A11-10:36 
LNCipedia gene ID: lnc-SLC39A11-10
Location (hg38): chr17:72081912-72089120
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 435 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000533039; ENST00000533039.1; AC005152.2-005; OTTHUMT00000389026.1; NONHSAT055662
Alternative gene names: ENSG00000234899; AC005152.2; ENSG00000234899.2; OTTHUMG00000132234.3; FLJ37644


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -233.1442 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-10:36 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC39A11-4:11
3.1 lnc-SLC39A11-2:11
4.0 SOX9-AS1:26
4.1 SOX9-AS1:26
5.0 SOX9-AS1:26
5.1 lnc-GRB2-56:36
5.2 lnc-SLC39A11-10:36