Transcript: lnc-SLC39A11-10:54

Basic information

LNCipedia transcript ID: lnc-SLC39A11-10:54 
HGNC Gene Symbol: lnc-SLC39A11-10    
HGNC Full Gene Name: regulator of chondrogenesis RNA
Ensembl Gene ID: ENSG00000228639
Ensembl Transcript ID: ENST00000430908
Location (hg38): chr17:72021851-72025962
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 346 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430908; ENST00000430908.2; AC005152.3-001; OTTHUMT00000255305.2; ENST00000430908.6
Alternative gene names: ENSG00000228639; AC005152.3; ENSG00000228639.2; OTTHUMG00000132237.2; ENSG00000228639.6; FLJ37644; LINC02095; ROCR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -218.8259 non-coding 
CPAT coding probability 2.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-10:54 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC39A11-5:9
3.1 lnc-SLC39A11-3:9
4.0 SOX9-AS1:42
4.1 SOX9-AS1:42
5.0 SOX9-AS1:42
5.1 lnc-GRB2-56:54
5.2 lnc-SLC39A11-10:54