Transcript: lnc-WISP1-4:1

Basic information

LNCipedia transcript ID: lnc-WISP1-4:1 
LNCipedia gene ID: lnc-WISP1-4
Location (hg38): chr8:133886496-133902332
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 507 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Hangauer et al., 2013
Alternative transcript names: ENST00000520149; ENST00000520149.1; RP11-157E21.1-001; OTTHUMT00000379151.1; FPKM1_group_32322_transcript_1
Alternative gene names: ENSG00000253593; RP11-157E21.1; ENSG00000253593.1; OTTHUMG00000164540.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.7507 non-coding 
CPAT coding probability 3.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WISP1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WISP1-4:1
3.1 lnc-WISP1-4:1
4.0 lnc-WISP1-4:1
4.1 lnc-WISP1-4:1
5.0 lnc-WISP1-4:1
5.1 lnc-MYC-58:1
5.2 lnc-WISP1-4:1