Gene: FTX

Basic information

LNCipedia gene ID: FTX 
Location (hg38): chrX:73946555-74293574
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA_gene
Transcripts: 57

Transcripts

Transcript IDLocation (hg38)Length
FTX:1 chrX:74028136-74293574 1639 bp
FTX:10 chrX:74274342-74292595 574 bp
FTX:11 chrX:74274356-74292529 561 bp
FTX:12 chrX:74280401-74292351 579 bp
FTX:13 chrX:73963955-74292342 1077 bp
FTX:14 chrX:74280461-74292075 654 bp
FTX:15 chrX:74281705-74284862 264 bp
FTX:16 chrX:74242610-74242901 292 bp
FTX:17 chrX:74200229-74242148 3897 bp
FTX:18 chrX:74196350-74225089 28740 bp
FTX:19 chrX:74209976-74213660 3685 bp
FTX:2 chrX:74028136-74293574 2356 bp
FTX:20 chrX:74164589-74210252 708 bp
FTX:21 chrX:74195099-74209325 2597 bp
FTX:22 chrX:74197126-74209076 579 bp
FTX:23 chrX:74197186-74208800 654 bp
FTX:24 chrX:74205202-74208176 2975 bp
FTX:25 chrX:74198430-74201587 264 bp
FTX:26 chrX:74028136-74293530 2312 bp
FTX:27 chrX:74069358-74293530 809 bp
FTX:28 chrX:74215562-74293530 47120 bp
FTX:29 chrX:74215562-74293530 9798 bp
FTX:3 chrX:74217066-74293551 37513 bp
FTX:30 chrX:74215562-74293530 59239 bp
FTX:31 chrX:74247864-74293530 711 bp
FTX:32 chrX:74271315-74293530 9661 bp
FTX:33 chrX:74280931-74293530 687 bp
FTX:34 chrX:74209039-74292583 10346 bp
FTX:35 chrX:74215562-74292583 65392 bp
FTX:36 chrX:74215562-74292583 61239 bp
FTX:37 chrX:74271315-74292583 9639 bp
FTX:38 chrX:74274342-74292583 562 bp
FTX:39 chrX:74278374-74292583 2580 bp
FTX:4 chrX:74201669-74293542 7047 bp
FTX:40 chrX:74215562-74292529 65596 bp
FTX:41 chrX:74274356-74292529 561 bp
FTX:42 chrX:73963955-74292351 1086 bp
FTX:43 chrX:74215562-74292351 59435 bp
FTX:44 chrX:74276141-74292351 5250 bp
FTX:45 chrX:74280401-74292351 579 bp
FTX:46 chrX:74290405-74292064 333 bp
FTX:47 chrX:74209039-74292064 10496 bp
FTX:48 chrX:74209039-74292064 10479 bp
FTX:49 chrX:74280461-74292064 643 bp
FTX:5 chrX:74280931-74293539 696 bp
FTX:50 chrX:74196351-74293574 8347 bp
FTX:51 chrX:74130309-74292594 1367 bp
FTX:52 chrX:73998242-74292583 9771 bp
FTX:53 chrX:73981896-74012945 11246 bp
FTX:54 chrX:73946555-74012945 12267 bp
FTX:55 chrX:73998242-74012945 11469 bp
FTX:58 chrX:74009389-74011468 905 bp
FTX:59 chrX:73947245-74005408 1269 bp
FTX:6 chrX:74247864-74293527 708 bp
FTX:7 chrX:74069358-74293472 751 bp
FTX:8 chrX:74291693-74292621 217 bp
FTX:9 chrX:74278374-74292600 2597 bp


Locus conservation

Locus conservation?
FTX no no no no

Available literature

  1. Caudron-Herger (2015), Dissecting the nascent human transcriptome by analysing the RNA content of transcription factories., Nucleic Acids Res.
  2. Guo (2015), Biological significance of long non-coding RNA FTX expression in human colorectal cancer., Int J Clin Exp Med
  3. Reiche (2014), Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes., PLoS ONE
  4. Soma (2014), Ftx is dispensable for imprinted X-chromosome inactivation in preimplantation mouse embryos., Sci Rep
  5. Yoon (2014), PAR-CLIP analysis uncovers AUF1 impact on target RNA fate and genome integrity., Nat Commun
  6. Zhao (2014), The miR-545/374a cluster encoded in the Ftx lncRNA is overexpressed in HBV-related hepatocellular carcinoma and promotes tumorigenesis and tumor progression., PLoS ONE
  7. Chureau (2011), Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region., Hum. Mol. Genet.
  8. Payer (2011), X-inactivation and X-reactivation: epigenetic hallmarks of mammalian reproduction and pluripotent stem cells., Hum. Genet.
  9. Kolesnikov (2010), [Comparative organization and the origin of noncoding regulatory RNA genes from X-chromosome inactivation center of human and mouse]., Genetika
  10. Chureau (2002), Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine., Genome Res.